Objective: introducing students to modern architectures for high performance computing. Students will learn how to properly test such architectures (computing power, bandwidth, latency, energy efficiency). Leveraging these skills, students will be introduced to the parallel programming based on MPI protocols (Message Passing Interface) and multi-threading with OpenMP.
Data Science for Life Sciences
Objective: presenting the most important conceptual aspects of information retrieval systems and both principles and techniques for data visualization.
Objective: introduce the main algorithmic methods for the storage, compression, and analysis of large amounts of biological data, with particular emphasis on the treatment of sequencing data produced with the latest generation sequencing technologies.
Objective: providing numerical analysis tools for scientific computing, with particular attention to linear algebra, polynomial approximation, numerical integration, numerical solution of ordinary differential equations and partial differential equations, approximation of eigenvalues and eigenvectors.
The course aims at introducing the student to modeling and analysis techniques, also data-based, in the area of computational neusciences.
Objective: introducing students to computational management of data, in particular the characterization of an information system, data modeling, design and management of databases, including non-traditional ones (eg, unstructured documents, spatial data, biological data , multimedia data), to the fundamentals of distributed data and to methodologies and techniques for the management and analysis of big data.
Objective: presenting advanced machine learning techniques, with a focus on Bayesian methods.
Objective: provide tools for the analysis of images and signals in the biomedical field.
Objective: providing advanced knowledge of both theoretical and practical programming in C / C ++ and Python, with particular regard to the principles of object oriented programming and best practices of software development (advanced use of version control systems, continuous integration, unit testing), and introducing the modern technology of algorithms development.
Objective: presenting statistical methods and computational analysis techniques in genomics.
Objective: introducing the main algorithmic methods for the storage, compression and analysis of large amounts of biological data, with particular emphasis on the treatment of sequencing data produced with next generation sequencing technologies.
Objective: introducing to the main techniques for the design of algorithms and data structures to manipulate strings, trees and large graphs, in particular to compression techniques and randomization.
NOTE: The equivalent name of this course is "Algorithms for Massive Data".
Objective: introducing students to the fundamentals and practice of stochastic modeling, simulation of stochastic models and inference of parameters starting from observations, with a focus on scalability for large models.
Objective: introducing the computational techniques used in molecular modeling and simulation, and illustrating how these techniques can be employed to describe and/ or predict chemical, physical and biological phenomena.
Objective: providing students with the methodological, theoretical and practical tools to formulate linear programming models and combinatorial optimization problems and to solve them, even for high dimensionality problems, using appropriate optimization software.
Objective: Introduce the students to the machine learning fundamentals, to the main techniques on supervised learning, and to the principal application domains. Present evolutionary calculation. The course explains how to design, develop and evaluate simple ML-based end-to-end systems and, at the same time, how to describe their operations.
Objective: introduce the student to the principles of learning from data based on statistics, and to the scientific treatment of data to obtain new and reproducible knowledge. Some of the main supervised and unsupervised statistical learning techniques are presented.